PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022556-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YB
Protein Properties Length: 221aa    MW: 22222.4 Da    PI: 6.8864
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022556-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.42.1e-5824119297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+kyre
  WALNUT_00022556-RA  24 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYRE 114
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  WALNUT_00022556-RA 115 MEGEK 119
                         ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.2E-5620130IPR009072Histone-fold
SuperFamilySSF471131.71E-4126130IPR009072Histone-fold
PfamPF008087.1E-282993IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.0E-215775No hitNo description
PROSITE patternPS0068506076IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.0E-217694No hitNo description
PRINTSPR006151.0E-2195113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MADSDNESGG HNNSNSANGD FASREQDRFL PIANVSRIMK KALPANAKIS KDAKETVQEC  60
VSEFISFITG EASDKCQREK RKTINGDDLL WAMTTLGFEE YVEPLKIYLQ KYREMEGEKS  120
TVGSRPGEKD GGGGSGGGGA AAGGGGSGGA VNSASSGGAG GFNGVGGVYG GMYGGVMGGH  180
HHGHMYGSGG FHHVGGIGGG VVGKDGSGGG GGVGGSIVRS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B1e-4924114292Transcription factor HapC (Eurofung)
4g91_B1e-4924114292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657477.12e-88PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotO233102e-77NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0H3XSM13e-89A0A0H3XSM1_VERFO; Nuclear transcription factor Y subunit B-11
STRINGVIT_12s0057g01010.t016e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-70nuclear factor Y, subunit B3